For best experience please turn on javascript and use a modern browser!

prof. dr. J. (Jos) Oomens

Faculty of Science
Van 't Hoff Institute for Molecular Sciences
Photographer: UvA Persvoorlichting, foto Jeroen Oerlemans

Visiting address
  • Science Park 904
Postal address
  • Postbus 94157
    1090 GD Amsterdam
Contact details
  • Publications

    2020

    • Martens, J., van Outersterp, R. E., Vreeken, R. J., Cuyckens, F., Coene, K. L. M., Engelke, U. F., ... Oomens, J. (2020). Infrared ion spectroscopy: New opportunities for small-molecule identification in mass spectrometry - A tutorial perspective. Analytica Chimica Acta, 1093, 1-15. https://doi.org/10.1016/j.aca.2019.10.043
    • Palotas, J., Martens, J., Berden, G., & Oomens, J. (2020). The infrared spectrum of protonated buckminsterfullerene C60H+. Nature Astronomy, 4(3), 240-245. https://doi.org/10.1038/s41550-019-0941-6
    • Wiersma, S. D., Candian, A., Bakker, J. M., Martens, J., Berden, G., Oomens, J., ... Petrignani, A. (2020). Photolysis-induced scrambling of PAHs as a mechanism for deuterium storage. Astronomy & Astrophysics, 635. https://doi.org/10.1051/0004-6361/201936982

    2019

    • Boles, G. C., Hightower, R. L., Berden, G., Oomens, J., & Armentrout, P. B. (2019). Zinc and Cadmium Complexation of L-Threonine: An Infrared Multiple Photon Dissociation Spectroscopy and Theoretical Study. Journal of Physical Chemistry B, 123(44), 9343-9354. https://doi.org/10.1021/acs.jpcb.9b08184 [details]
    • Boles, G. C., Kempkes, L. J. M., Martens, J., Berden, G., Oomens, J., & Armentrout, P. B. (2019). Ion spectroscopy and guided ion beam studies of protonated asparaginyl-threonine decomposition: Influence of a hydroxyl containing C-Terminal residue on deamidation processes. International Journal of Mass Spectrometry, 442, 64-82. https://doi.org/10.1016/j.ijms.2019.05.010 [details]
    • Kempkes, L. J. M., Martens, J., Berden, G., Houthuijs, K. J., & Oomens, J. (2019). Investigation of the position of the radical in z3-ions resulting from electron transfer dissociation using infrared ion spectroscopy. Faraday Discussions, 217, 434-452. https://doi.org/10.1039/c8fd00202a [details]
    • Munshi, M. U., Martens, J., Berden, G., & Oomens, J. (2019). Gas-Phase Infrared Ion Spectroscopy Characterization of Cu(II/I)Cyclam and Cu(II/I)2,2′-Bipyridine Redox Pairs. The Journal of Physical Chemistry. A, 123(19), 4149-4157. https://doi.org/10.1021/acs.jpca.9b00793 [details]
    • Munshi, M. U., Martens, J., Berden, G., & Oomens, J. (2019). Protoisomerization of Indigo and Isoindigo Dyes Confirmed by Gas-Phase Infrared Ion Spectroscopy. Journal of Physical Chemistry A, 123(38), 8226-8233. https://doi.org/10.1021/acs.jpca.9b06858 [details]
    • Oomens, J., Polfer, N. C., Berden, G., & Eyler, J. R. (2019). Gas-phase metal ion chelation investigated with IRMPD spectroscopy: A brief review of Robert Dunbar's contributions. European Journal of Mass Spectrometry, 25(1), 86-96. https://doi.org/10.1177/1469066718799175 [details]
    • Owen, C. J., Boles, G. C., Berden, G., Oomens, J., & Armentrout, P. B. (2019). Experimental and theoretical investigations of infrared multiple photon dissociation spectra of lysine complexes with Zn2+ and Cd2+. European Journal of Mass Spectrometry, 25(1), 97-111. https://doi.org/10.1177/1469066718792902 [details]
    • Paul, M., Peckelsen, K., Thomulka, T., Neudörfl, J., Martens, J., Berden, G., ... Schäfer, M. (2019). Hydrogen tunneling avoided: enol-formation from a charge-tagged phenyl pyruvic acid derivative evidenced by tandem-MS, IR ion spectroscopy and theory. Physical Chemistry Chemical Physics, 21(30), 16591-16600. https://doi.org/10.1039/c9cp02316j [details]
    • Perez, E., Corcovilos, T. A., Gibson, J. K., Martens, J., Berden, G., Oomens, J., & Van Stipdonk, M. J. (2019). Isotope labeling and infrared multiple-photon photodissociation investigation of product ions generated by dissociation of [ZnNO3(CH3OH)(2)](+): Conversion of methanol to formaldehyde. European Journal of Mass Spectrometry, 25(1), 58-72. https://doi.org/10.1177/1469066718809881
    • Switzer, C., Martens, J., Kempkes, L. J. M., Berden, G., Oomens, J., & Hellman Morton, T. (2019). Gas-phase vibrations of the anionic, hydrogen-bonded dimer of 9-methylguanine. International Journal of Mass Spectrometry, 446, [116211]. https://doi.org/10.1016/j.ijms.2019.116211 [details]
    • Tatosian, I., Metzler, L., Graca, C., Bubas, A., Corcovilos, T., Martens, J., ... Van Stipdonk, M. J. (2019). Measurement of the asymmetric UO22+ stretching frequency for [UVIO2(F)3]- using IRMPD spectroscopy. International Journal of Mass Spectrometry, 446, [116231]. https://doi.org/10.1016/j.ijms.2019.116231 [details]
    • Walhout, E. Q., Dorn, S. E., Martens, J., Berden, G., Oomens, J., Cheong, PH-Y., ... O'Brien, R. E. (2019). Infrared Ion Spectroscopy of Environmental Organic Mixtures: Probing the Composition of a-Pinene Secondary Organic Aerosol. Environmental Science and Technology, 53(13), 7604-7612. https://doi.org/10.1021/acs.est.9b02077 [details]
    • van Outersterp, R. E., Houthuijs, K. J., Berden, G., Engelke, U. F., Kluijtmans, L. A. J., Wevers, R. A., ... Martens, J. (2019). Reference-standard free metabolite identification using infrared ion spectroscopy. International Journal of Mass Spectrometry, 443, 77-85. https://doi.org/10.1016/j.ijms.2019.05.015 [details]

    2018

    • Bendo, J-A., Martens, J., Berden, G., Oomens, J., & Morton, T. H. (2018). Gas phase vibrations of an anionic, hydrogen-bonded homodimer of a nucleobase analogue: Isocytosino-8-trifluoromethylquinolone. International Journal of Mass Spectrometry, 429, 206-211. https://doi.org/10.1016/j.ijms.2018.01.004 [details]
    • Boles, G. C., Hightower, R. L., Coates, R. A., McNary, C. P., Berden, G., Oomens, J., & Armentrout, P. B. (2018). Experimental and Theoretical Investigations of Infrared Multiple Photon Dissociation Spectra of Aspartic Acid Complexes with Zn2+ and Cd2+. Journal of Physical Chemistry B, 122(14), 3836-3853. https://doi.org/10.1021/acs.jpcb.8b00801 [details]
    • Bouwman, J., Horst, S., & Oomens, J. (2018). Spectroscopic Characterization of the Product Ions Formed by Electron Ionization of Adamantane. ChemPhysChem, 19(23), 3211-3218. https://doi.org/10.1002/cphc.201800846 [details]
    • Chakrabarty, S., DiTucci, M. J., Berden, G., Oomens, J., & Williams, E. R. (2018). Structural Investigation of the Hormone Melatonin and Its Alkali and Alkaline Earth Metal Complexes in the Gas Phase. Journal of the American Society for Mass Spectrometry, 29(9), 1835-1847. https://doi.org/10.1007/s13361-018-2020-0 [details]
    • Chalifoux, A. M., Boles, G. C., Berden, G., Oomens, J., & Armentrout, P. B. (2018). Experimental and theoretical investigations of infrared multiple photon dissociation spectra of arginine complexes with Zn2+ and Cd2+. Physical Chemistry Chemical Physics, 20(31), 20712-20725. https://doi.org/10.1039/c8cp03484b [details]
    • Dunbar, R. C., Martens, J., Berden, G., & Oomens, J. (2018). Binding of Divalent Metal Ions with Deprotonated Peptides: Do Gas-Phase Anions Parallel the Condensed Phase? The Journal of Physical Chemistry. A, 122(25), 5589-5596. https://doi.org/10.1021/acs.jpca.8b02926 [details]
    • Dunbar, R. C., Martens, J., Berden, G., & Oomens, J. (2018). Transition metal(II) complexes of histidine-containing tripeptides: Structures, and infrared spectroscopy by IRMPD. International Journal of Mass Spectrometry, 429, 198-205. https://doi.org/10.1016/j.ijms.2017.10.004 [details]
    • Featherstone, J., Chong, T., Martens, J. K., Oomens, J., & McMahon, T. B. (2018). Inverse Sandwich Cyclopentadienyl Complexes of Sodium in the Gas Phase. The Journal of Physical Chemistry. A, 122(43), 8659-8664. https://doi.org/10.1021/acs.jpca.8b09366 [details]
    • Gibson, J. K., de Jong, W. A., van Stipdonk, M. J., Martens, J., Berden, G., & Oomens, J. (2018). Equatorial coordination of uranyl: Correlating ligand charge donation with the Oyl-U-Oyl asymmetric stretch frequency. Journal of Organometallic Chemistry, 857, 94-100. https://doi.org/10.1016/j.jorganchem.2017.10.010 [details]
    • Heiles, S., Berden, G., Oomens, J., & Williams, E. R. (2018). Competition between salt bridge and non-zwitterionic structures in deprotonated amino acid dimers. Physical Chemistry Chemical Physics, 20(23), 15641-15652. https://doi.org/10.1039/c8cp01458b [details]
    • Jian, J., Hu, S-X., Li, W-L., van Stipdonk, M. J., Martens, J., Berden, G., ... Gibson, J. K. (2018). Uranyl/12-crown-4 Ether Complexes and Derivatives: Structural Characterization and Isomeric Differentiation. Inorganic Chemistry, 57(7), 4125-4134. https://doi.org/10.1021/acs.inorgchem.8b00306 [details]
    • Kempkes, L. J. M., Boles, G. C., Martens, J., Berden, G., Armentrout, P. B., & Oomens, J. (2018). Deamidation of Protonated Asparagine-Valine Investigated by a Combined Spectroscopic, Guided Ion Beam, and Theoretical Study. The Journal of Physical Chemistry. A, 122(9), 2424-2436. https://doi.org/10.1021/acs.jpca.7b12348 [details]
    • Kempkes, L. J. M., Martens, J., Berden, G., & Oomens, J. (2018). w‐Type ions formed by electron transfer dissociation of Cys‐containing peptides investigated by infrared ion spectroscopy. Journal of Mass Spectrometry, 53(12), 1207-1213. https://doi.org/10.1002/jms.4298 [details]
    • Kempkes, L. J. M., Martens, J., Berden, G., & Oomens, J. (2018). Dehydration reactions of protonated dipeptides containing asparagine or glutamine investigated by infrared ion spectroscopy. International Journal of Mass Spectrometry, 429, 90-100. https://doi.org/10.1016/j.ijms.2017.06.004 [details]
    • Kempkes, L. J. M., Martens, J., Berden, G., & Oomens, J. (2018). Spectroscopic Characterization of an Extensive Set of c-Type Peptide Fragment Ions Formed by Electron Transfer Dissociation Suggests Exclusive Formation of Amide Isomers. Journal of Physical Chemistry Letters, 9(22), 6404-6411. https://doi.org/10.1021/acs.jpclett.8b02850 [details]
    • Mackie, C. J., Candian, A., Huang, X., Maltseva, E., Petrignani, A., Oomens, J., ... Tielens, A. G. G. M. (2018). The anharmonic quartic force field infrared spectra of hydrogenated and methylated PAHs. Physical Chemistry Chemical Physics, 20(2), 1189-1197. https://doi.org/10.1039/c7cp06546a [details]
    • Maltseva, E., Mackie, C. J., Candian, A., Petrignani, A., Huang, X., Lee, T. J., ... Buma, W. J. (2018). High-resolution IR absorption spectroscopy of polycyclic aromatic hydrocarbons in the 3 μm region: role of hydrogenation and alkylation. Astronomy & Astrophysics, 610, [A65]. https://doi.org/10.1051/0004-6361/201732102 [details]
    • Martens, J., Berden, G., Bentlage, H., Coene, K. L. M., Engelke, U. F., Wishart, D., ... Oomens, J. (2018). Unraveling the unknown areas of the human metabolome: the role of infrared ion spectroscopy. Journal of inherited metabolic disease, 41(3), 367-377. https://doi.org/10.1007/s10545-018-0161-8 [details]
    • Martin-Somer, A., Martens, J., Grzetic, J., Hase, W. L., Oomens, J., & Spezia, R. (2018). Unimolecular Fragmentation of Deprotonated Diproline [Pro2-H] Studied by Chemical Dynamics Simulations and IRMPD Spectroscopy. The Journal of Physical Chemistry. A, 122(10), 2612-2625. https://doi.org/10.1021/acs.jpca.7b11873 [details]
    • Smith, Z. M., Steinmetz, V., Martens, J., Oomens, J., & Poutsma, J. C. (2018). Infrared multiple photon dissociation spectroscopy of cationized canavanine: Side-chain substitution influences gas-phase zwitterion formation. International Journal of Mass Spectrometry, 429, 158-173. https://doi.org/10.1016/j.ijms.2017.08.009 [details]
    • van Outersterp, R. E., Martens, J., Berden, G., Steill, J. D., Oomens, J., & Rijs, A. M. (2018). Structural characterization of nucleotide 5′-triphosphates by infrared ion spectroscopy and theoretical studies. Physical Chemistry Chemical Physics, 20(44), 28319-28330. https://doi.org/10.1039/c8cp03314e [details]

    2017

    • Abergel, R. J., de Jong, W. A., Deblonde, GJ-P., Dau, P. D., Captain, I., Eaton, T. M., ... Gibson, J. K. (2017). Cleaving Off Uranyl Oxygens through Chelation: A Mechanistic Study in the Gas Phase. Inorganic Chemistry, 56(21), 12930-12937. https://doi.org/10.1021/acs.inorgchem.7b01720 [details]
    • Akinyemi, T. E., Wu, R. R., Nei, Y-W., Cunningham, N. A., Roy, H. A., Steill, J. D., ... Rodgers, M. T. (2017). Influence of Transition Metal Cationization versus Sodium Cationization and Protonation on the Gas-Phase Tautomeric Conformations and Stability of Uracil: Application to [Ura+Cu]+ and [Ura+Ag]+. Journal of the American Society for Mass Spectrometry, 28(11), 2438-2453. https://doi.org/10.1007/s13361-017-1771-3 [details]
    • Bendo, J-A., Martens, J., Berden, G., Oomens, J., & Morton, T. H. (2017). Hydrogen Liberation from Gaseous 2-Bora-1,3-diazacycloalkanium Cations. The Journal of Physical Chemistry. A, 121(41), 7910-7916. https://doi.org/10.1021/acs.jpca.7b07990 [details]
    • Boles, G. C., Owen, C. J., Berden, G., Oomens, J., & Armentrout, P. B. (2017). Experimental and theoretical investigations of infrared multiple photon dissociation spectra of glutamic acid complexes with Zn2+ and Cd2+. Physical Chemistry Chemical Physics, 19(19), 12394-12406. https://doi.org/10.1039/c7cp01786c [details]
    • Dunbar, R. C., Martens, J., Berden, G., & Oomens, J. (2017). Water Microsolvation Can Switch the Binding Mode of Ni(II) with Small Peptides. The Journal of Physical Chemistry Letters, 8(12), 2634-2638. https://doi.org/10.1021/acs.jpclett.7b00973 [details]
    • Martens, J., Berden, G., van Outersterp, R. E., Kluijtmans, L. A. J., Engelke, U. F., van Karnebeek, C. D. M., ... Oomens, J. (2017). Molecular identification in metabolomics using infrared ion spectroscopy. Scientific Reports, 7, [3363]. https://doi.org/10.1038/s41598-017-03387-4 [details]
    • Martens, J., Koppen, V., Berden, G., Cuyckens, F., & Oomens, J. (2017). Combined Liquid Chromatography-Infrared Ion Spectroscopy for Identification of Regioisomeric Drug Metabolites. Analytical Chemistry, 89(8), 4359-4362. https://doi.org/10.1021/acs.analchem.7b00577 [details]
    • Munshi, M. U., Berden, G., Martens, J., & Oomens, J. (2017). Gas-phase vibrational spectroscopy of triphenylamine: the effect of charge on structure and spectra. Physical Chemistry Chemical Physics, 19(30), 19881-19889. https://doi.org/10.1039/c7cp02638b [details]
    • Munshi, M. U., Craig, S. M., Berden, G., Martens, J., DeBlase, A. F., Foreman, D. J., ... Johnson, M. A. (2017). Preparation of Labile Ni+(cyclam) Cations in the Gas Phase Using Electron-Transfer Reduction through Ion-Ion Recombination in an Ion Trap and Structural Characterization with Vibrational Spectroscopy. The Journal of Physical Chemistry Letters, 8(20), 5047-5052. https://doi.org/10.1021/acs.jpclett.7b02223 [details]
    • Oomens, J., Berden, G., & Morton, T. H. (2017). Low-Frequency CH Stretch Vibrations of Free Alkoxide Ions. Angewandte Chemie, International Edition, 56(1), 217-220. https://doi.org/10.1002/anie.201609437, https://doi.org/10.1002/ange.201609437 [details]
    • Oomens, J., Berden, G., & Morton, T. H. (2017). Low-Frequency CH Stretch Vibrations of Free Alkoxide Ions. Angewandte Chemie, 129(1), 223-226. https://doi.org/10.1002/ange.201609437, https://doi.org/10.1002/anie.201609437 [details]
    • Peckelsen, K., Martens, J., Berden, G., Oomens, J., Dunbar, R. C., Meijer, A. J. H. M., & Schäfer, M. (2017). Gas-phase complexes of Ni2+ and Ca2+ with deprotonated histidylhistidine (HisHis): A model case for polyhistidyl-metal binding motifs. Journal of Molecular Spectroscopy, 332, 38-44. https://doi.org/10.1016/j.jms.2016.10.008 [details]
    • Peckelsen, K., Martens, J., Czympiel, L., Oomens, J., Berden, G., Gründemann, D., ... Schäfer, M. (2017). Ergothioneine and related histidine derivatives in the gas phase: tautomer structures determined by IRMPD spectroscopy and theory. Physical Chemistry Chemical Physics, 19(34), 23362-23372. https://doi.org/10.1039/c7cp03843g [details]
    • Poutsma, J. C., Martens, J., Oomens, J., Maitre, P., Steinmetz, V., Bernier, M., ... Wysocki, V. (2017). Infrared Multiple-Photon Dissociation Action Spectroscopy of the b2 + Ion from PPG: Evidence of Third Residue Affecting b2 + Fragment Structure. Journal of the American Society for Mass Spectrometry, 28(7), 1482-1488. https://doi.org/10.1007/s13361-017-1659-2 [details]
    • Schaefer, M., Peckelsen, K., Paul, M., Martens, J., Oomens, J., Berden, G., ... Meijer, A. J. H. M. (2017). Hydrogen Tunneling above Room Temperature Evidenced by Infrared Ion Spectroscopy. Journal of the American Chemical Society, 139(16), 5779-5786. https://doi.org/10.1021/jacs.6b10348 [details]
    • Schindler, B., Barnes, L., Gray, C. J., Chambert, S., Flitsch, S. L., Oomens, J., ... Compagnon, I. (2017). IRMPD Spectroscopy Sheds New (Infrared) Light on the Sulfate Pattern of Carbohydrates. The Journal of Physical Chemistry. A, 121(10), 2114-2120. https://doi.org/10.1021/acs.jpca.6b11642 [details]
    • Wu, R. R., Hamlow, L. A., He, C. C., Nei, Y., Berden, G., Oomens, J., & Rodgers, M. T. (2017). N3 and O2 Protonated Conformers of the Cytosine Mononucleotides Coexist in the Gas Phase. Journal of the American Society for Mass Spectrometry, 28(8), 1638-1646. https://doi.org/10.1007/s13361-017-1653-8 [details]
    • de Haas, A. J., Oomens, J., & Bouwman, J. (2017). Facile pentagon formation in the dissociation of polyaromatics. Physical Chemistry Chemical Physics, 19(4), 2974-2980. https://doi.org/10.1039/c6cp08349h [details]
    • de Jong, W. A., Dau, P. D., Wilson, R. E., Marçalo, J., Van Stipdonk, M. J., Corcovilos, T. A., ... Gibson, J. K. (2017). Revealing Disparate Chemistries of Protactinium and Uranium. Synthesis of the Molecular Uranium Tetroxide Anion, UO4-. Inorganic Chemistry, 56(6), 3686-3694. https://doi.org/10.1021/acs.inorgchem.7b00144 [details]

    2016

    • Bouwman, J., de Haas, A. J., & Oomens, J. (2016). Spectroscopic evidence for the formation of pentalene(+) in the dissociative ionization of naphthalene. Chemical Communications, 52(12), 2636-2638. https://doi.org/10.1039/c5cc10090a [details]
    • Coates, R. A., Boles, G. C., McNary, C. P., Berden, G., Oomens, J., & Armentrout, P. B. (2016). Zn2+ and Cd2+ cationized serine complexes: infrared multiple photon dissociation spectroscopy and density functional theory investigations. Physical Chemistry Chemical Physics, 18(32), 22434-22445. https://doi.org/10.1039/c6cp03805k
    • Dau, P. D., Rios, D., Gong, Y., Michelini, M. C., Marçalo, J., Shuh, D. K., ... Gibson, J. K. (2016). Synthesis and Hydrolysis of Uranyl, Neptunyl, and Plutonyl Gas Phase Complexes Exhibiting Discrete Actinide-Carbon Bonds. Organometallics, 35(9), 1228-1240. https://doi.org/10.1021/acs.organomet.6b00079
    • Dunbar, R. C., Martens, J., Berden, G., & Oomens, J. (2016). Complexes of Ni(II) and Cu(II) with small peptides: deciding whether to deprotonate. Physical Chemistry Chemical Physics, 18(38), 26923-26932. https://doi.org/10.1039/c6cp03974j [details]
    • Gao, J., Berden, G., Rodgers, M. T., & Oomens, J. (2016). Interaction of Cu+ with cytosine and formation of i-motif-like C-M+-C complexes: alkali versus coinage metals. Physical Chemistry Chemical Physics, 18(10), 7269-7277. https://doi.org/10.1039/c6cp00234j [details]
    • Gao, J., Bouwman, J., Berden, G., & Oomens, J. (2016). The Influence of Metal Ion Binding on the IR Spectra of Nitrogen-Containing PAHs. The Journal of Physical Chemistry. A, 120(40), 7800-7809. https://doi.org/10.1021/acs.jpca.6b05060
    • Hu, S-X., Gibson, J. K., Li, W-L., Van Stipdonk, M. J., Martens, J., Berden, G., ... Li, J. (2016). Electronic structure and characterization of a uranyl di-15-crown-5 complex with an unprecedented sandwich structure. Chemical Communications, 52(86), 12761-12764. https://doi.org/10.1039/c6cc07205d [details]
    • Kempkes, L. J. M., Martens, J. K., Grzetic, J., Berden, G., & Oomens, J. (2016). Deamidation reactions of protonated asparagine and glutamine investigated by ion spectroscopy. Rapid Communications in Mass Spectrometry, 30(4), 483-490. https://doi.org/10.1002/rcm.7464 [details]
    • Kempkes, L. J. M., Martens, J., Grzetic, J., Berden, G., & Oomens, J. (2016). Deamidation Reactions of Asparagine- and Glutamine-Containing Dipeptides Investigated by Ion Spectroscopy. Journal of the American Society for Mass Spectrometry, 27(11), 1855-1869. https://doi.org/10.1007/s13361-016-1462-5 [details]
    • Kiawi, D. M., Chernyy, V., Oomens, J., Buma, W. J., Jamshidi, Z., Visscher, L., ... Bakker, J. M. (2016). Water Dissociation upon Adsorption onto Free Iron Clusters Is Size Dependent. The Journal of Physical Chemistry Letters, 7(13), 2381-2387. https://doi.org/10.1021/acs.jpclett.6b00891
    • Lesslie, M., Lau, JK-C., Lawler, J. T., Siu, K. W. M., Oomens, J., Berden, G., ... Ryzhov, V. (2016). Alkali-Metal-Ion-Assisted Hydrogen Atom Transfer in the Homocysteine Radical. CHEMISTRY-A EUROPEAN JOURNAL, 22(7), 2243-2246. https://doi.org/10.1002/chem.201504631 [details]
    • Mackie, C. J., Candian, A., Huang, X., Maltseva, E., Petrignani-Taube, A., Oomens, J., ... Tielens, A. G. G. M. (2016). The anharmonic quartic force field infrared spectra of five non-linear polycyclic aromatic hydrocarbons: Benz[a]anthracene, chrysene, phenanthrene, pyrene, and triphenylene. Journal of Chemical Physics, 145(8). https://doi.org/10.1063/1.4961438
    • Maltseva, E., Petrignani-Taube, A., Candian, A., Mackie, C. J., Huang, X., Lee, T. J., ... Buma, W. J. (2016). HIGH-RESOLUTION IR ABSORPTION SPECTROSCOPY OF POLYCYCLIC AROMATIC HYDROCARBONS IN THE 3 mu m REGION: ROLE OF PERIPHERY. Astrophysical Journal, 831(1). https://doi.org/10.3847/0004-637X/831/1/58
    • Maltseva, E., Petrignani-Taube, A., Candian, A., Mackie, C. J., Huang, X., Lee, T. J., ... Buma, W. J. (2016). HIGH-RESOLUTION IR ABSORPTION SPECTROSCOPY OF POLYCYCLIC AROMATIC HYDROCARBONS: THE REALM OF ANHARMONICITY (vol 814, 23, 2015). Astrophysical Journal, 820(1). https://doi.org/10.3847/0004-637X/820/1/81
    • Martens, J., Berden, G., & Oomens, J. (2016). Structures of Fluoranthene Reagent Anions Used in Electron Transfer Dissociation and Proton Transfer Reaction Tandem Mass Spectrometry. Analytical Chemistry, 88(12), 6126-6129. https://doi.org/10.1021/acs.analchem.6b01483
    • Martens, J., Berden, G., Gebhardt, C. R., & Oomens, J. (2016). Infrared ion spectroscopy in a modified quadrupole ion trap mass spectrometer at the FELIX free electron laser laboratory. Review of Scientific Instruments, 87(10). https://doi.org/10.1063/1.4964703
    • Martens, J., Grzetic, J., Berden, G., & Oomens, J. (2016). Structural identification of electron transfer dissociation products in mass spectrometry using infrared ion spectroscopy. Nature Communications, 7, [11754]. https://doi.org/10.1038/ncomms11754
    • Nieto, P., Guenther, A., Berden, G., Oomens, J., & Dopfer, O. (2016). IRMPD Spectroscopy of Metalated Flavins: Structure and Bonding of Lumiflavin Complexes with Alkali and Coinage Metal Ions. The Journal of Physical Chemistry. A, 120(42), 8297-8308. https://doi.org/10.1021/acs.jpca.6b08281
    • Petrignani, A., Vala, M., Eyler, J. R., Tielens, A. G. G. M., Berden, G., van der Meer, A. F. G., ... Oomens, J. (2016). BREAKDOWN PRODUCTS OF GASEOUS POLYCYCLIC AROMATIC HYDROCARBONS INVESTIGATED WITH INFRARED ION SPECTROSCOPY. Astrophysical Journal, 826(1), [33]. https://doi.org/10.3847/0004-637X/826/1/33 [details]
    • Shaffer, C. J., Martens, J., Marek, A., Oomens, J., & Turecek, F. (2016). Photoleucine Survives Backbone Cleavage by Electron Transfer Dissociation. A Near-UV Photodissociation and Infrared Multiphoton Dissociation Action Spectroscopy Study. Journal of the American Society for Mass Spectrometry, 27(7), 1176-1185. https://doi.org/10.1007/s13361-016-1390-4
    • Wu, R. R., He, C. C., Hamlow, L. A., Nei, Y. -W., Berden, G., Oomens, J., & Rodgers, M. T. (2016). N3 Protonation Induces Base Rotation of 2 '-Deoxyadenosine-5 '-monophosphate and Adenosine-5 '-monophosphate. The journal of Physical Chemistry. B, 120(20), 4616-4624. https://doi.org/10.1021/acs.jpcb.6b04052
    • Wu, R. R., He, C. C., Hamlow, L. A., Nei, Y. ., Berden, G., Oomens, J., & Rodgers, M. T. (2016). Protonation induces base rotation of purine nucleotides pdGuo and pGuo. Physical Chemistry Chemical Physics, 18(22), 15081-15090. https://doi.org/10.1039/c6cp01354f
    • Wu, R. R., Yang, B., Frieler, C. E., Berden, G., Oomens, J., & Rodgers, M. T. (2016). 2,4-Dihydroxy and O2 Protonated Tautomers of dThd and Thd Coexist in the Gas Phase: Methylation Alters Protonation Preferences versus dUrd and Urd. Journal of the American Society for Mass Spectrometry, 27(3), 410-421. https://doi.org/10.1007/s13361-015-1303-y [details]
    • Álvaro Galué, H., Oomens, J., Buma, W. J., & Redlich, B. (2016). Electron-​flux infrared response to varying π-​bond topology in charged aromatic monomers. Nature Communications, 7, [12633]. https://doi.org/10.1038/ncomms12633 [details]

    2015

    2014

    • Gao, J., Berden, G., & Oomens, J. (2014). Laboratory Infrared Spectroscopy of Gaseous Negatively Charged Polyaromatic Hydrocarbons. Astrophysical Journal, 787(2). https://doi.org/10.1088/0004-637X/787/2/170 [details]
    • Günther, A., Nieto, P., Berden, G., Oomens, J., & Dopfer, O. (2014). IRMPD spectroscopy of metalated flavins: structure and bonding of Mq+-lumichrome complexes (Mq+ = Li+-Cs+, Ag+, Mg2+). Physical Chemistry Chemical Physics, 16(27), 14161-14171. https://doi.org/10.1039/c4cp01524j [details]
    • Holland, M. C., Berden, G., Oomens, J., Meijer, A. J. H. M., Schäfer, M., & Gilmour, R. (2014). Infrared Multiphoton Dissociation Spectroscopic Analysis of Noncovalent Interactions in Organocatalysis. European Journal of Organic Chemistry, 2014(26), 5675-5680. https://doi.org/10.1002/ejoc.201402845 [details]
    • Langer, J., Günther, A., Seidenbecher, S., Berden, G., Oomens, J., & Dopfer, O. (2014). Probing Protonation Sites of Isolated Flavins Using IR Spectroscopy: From Lumichrome to the Cofactor Flavin Mononucleotide. ChemPhysChem, 15(12), 2550-2562. https://doi.org/10.1002/cphc.201402146 [details]
    • Morsa, D., Gabelica, V., Rosu, F., Oomens, J., & De Pauw, E. (2014). Dissociation Pathways of Benzylpyridinium "Thermometer" Ions Depend on the Activation Regime: An IRMPD Spectroscopy Study. The Journal of Physical Chemistry Letters, 5(21), 3787-3791. https://doi.org/10.1021/jz501903b [details]
    • Steill, J. D., May, A. L., Campagna, S. R., Oomens, J., & Compton, R. N. (2014). Structure and Stability of Phenoxide and Fluorophenoxide Anions Investigated with Infrared Multiple-Photon Dissociation and Detachment Spectroscopy and Tandem Mass Spectrometry. The Journal of Physical Chemistry. A, 118(37), 8597-8605. https://doi.org/10.1021/jp503103a [details]
    • van Stipdonk, M. J., Basu, P., Dille, S. A., Gibson, J. K., Berden, G., & Oomens, J. (2014). Infrared Multiple Photon Dissociation Spectroscopy of a Gas-Phase Oxo-Molybdenum Complex with 1,2-Dithiolene Ligands. The Journal of Physical Chemistry. A, 118(29), 5407-5418. https://doi.org/10.1021/jp503222v [details]
    • van Stipdonk, M. J., Kullman, M. J., Berden, G., & Oomens, J. (2014). Infrared multiple-photon dissociation spectroscopy of deprotonated 6-hydroxynicotinic acid. Rapid Communications in Mass Spectrometry, 28(7), 691-698. https://doi.org/10.1002/rcm.6829 [details]

    2013

    • Austin, C. A., Chen, Y., Kaczan, C. M., Berden, G., Oomens, J., & Rodgers, M. T. (2013). Infrared multiple photon dissociation action spectroscopy of alkali metal cation-cyclen complexes: Effects of alkali metal cation size on gas-phase conformation. International Journal of Mass Spectrometry, 354-355, 346-355. https://doi.org/10.1016/j.ijms.2013.08.004 [details]
    • Dain, R. P., Gresham, G., Groenewold, G. S., Steill, J. D., Oomens, J., & Van Stipdonk, M. J. (2013). Infrared multiple photon dissociation spectroscopy of group I and group II metal complexes with Boc-hydroxylamine. Rapid Communications in Mass Spectrometry, 27(16), 1867-1872. https://doi.org/10.1002/rcm.6640 [details]
    • Demireva, M., Oomens, J., Berden, G., & Williams, E. R. (2013). The Ionic Hydrogen/Deuterium Bonds between Diammoniumalkane Dications and Halide Anions. ChemPlusChem, 78(9), 995-1004. https://doi.org/10.1002/cplu.201300084 [details]
    • Dunbar, R. C., Berden, G., & Oomens, J. (2013). How does a small peptide choose how to bind a metal ion? IRMPD and computational survey of CS versus Iminol binding preferences. International Journal of Mass Spectrometry, 354-355, 356-364. https://doi.org/10.1016/j.ijms.2013.07.017 [details]
    • Dunbar, R. C., Oomens, J., Berden, G., Lau, J. K. C., Verkerk, U. H., Hopkinson, A. C., & Siu, K. W. M. (2013). Metal Ion Complexes with HisGly: Comparison with PhePhe and PheGly. The Journal of Physical Chemistry. A, 117(25), 5335-5343. https://doi.org/10.1021/jp4021917 [details]
    • Dunbar, R. C., Steill, J. D., Polfer, N. C., & Oomens, J. (2013). Metal Cation Binding to Gas-Phase Pentaalanine: Divalent Ions Restructure the Complex. The Journal of Physical Chemistry. A, 117(6), 1094-1101. https://doi.org/10.1021/jp304256f [details]
    • Grzetic, J., & Oomens, J. (2013). Effect of the Asn side chain on the dissociation of deprotonated peptides elucidated by IRMPD spectroscopy. International Journal of Mass Spectrometry, 354-355, 70-77. https://doi.org/10.1016/j.ijms.2013.05.005 [details]
    • Grzetic, J., & Oomens, J. (2013). Spectroscopic Identification of Cyclic Imide b2-Ions from Peptides Containing Gln and Asn Residues. Journal of the American Society for Mass Spectrometry, 24(8), 1228-1241. https://doi.org/10.1007/s13361-013-0661-6 [details]
    • Gámez, F., Hurtado, P., Hortal, A. R., Martínez-Haya, B., Berden, G., & Oomens, J. (2013). Cations in a Molecular Funnel: Vibrational Spectroscopy of Isolated Cyclodextrin Complexes with Alkali Metals. ChemPhysChem, 14(2), 400-407. https://doi.org/10.1002/cphc.201200810 [details]
    • Jaeqx, S., Du, W., Meijer, E. J., Oomens, J., & Rijs, A. M. (2013). Conformational Study of Z-Glu-OH and Z-Arg-OH: Dispersion Interactions versus Conventional Hydrogen Bonding. The Journal of Physical Chemistry. A, 117(6), 1216-1227. https://doi.org/10.1021/jp3053339 [details]
    • Jaeqx, S., Oomens, J., & Rijs, A. M. (2013). Gas-phase salt bridge interactions between glutamic acid and arginine. Physical Chemistry Chemical Physics, 15(38), 16341-16352. https://doi.org/10.1039/c3cp52508b [details]
    • Lapoutre, V. J. F., Redlich, B., Meer, A. F. G., Oomens, J., Bakker, J. M., Sweeney, A., ... Armentrout, P. B. (2013). Structures of the Dehydrogenation Products of Methane Activation by 5d Transition Metal Cations. The Journal of Physical Chemistry. A, 117(20), 4115-4126. https://doi.org/10.1021/jp400305k [details]
    • Nei, Y. W., Crampton, K. T., Berden, G., Oomens, J., & Rodgers, M. T. (2013). Infrared Multiple Photon Dissociation Action Spectroscopy of Deprotonated RNA Mononucleotides: Gas-Phase Conformations and Energetics. The Journal of Physical Chemistry. A, 117(41), 10634-10649. https://doi.org/10.1021/jp4039495 [details]
    • Nei, Y. W., Hallowita, N., Steill, J. D., Oomens, J., & Rodgers, M. T. (2013). Infrared Multiple Photon Dissociation Action Spectroscopy of Deprotonated DNA Mononucleotides: Gas-Phase Conformations and Energetics. The Journal of Physical Chemistry. A, 117(6), 1319-1335. https://doi.org/10.1021/jp3077936 [details]
    • Nieckarz, R. J., Oomens, J., Berden, G., Sagulenko, P., & Zenobi, R. (2013). Infrared multiple photon dissociation (IRMPD) spectroscopy of oxazine dyes. Physical Chemistry Chemical Physics, 15(14), 5049-5056. https://doi.org/10.1039/c3cp00158j [details]
    • Osburn, S., Berden, G., Oomens, J., Gulyuz, K., Polfer, N. C., O'Hair, R. A. J., & Ryzhov, V. (2013). Structure and Reactivity of the Glutathione Radical Cation: Radical Rearrangement from the Cysteine Sulfur to the Glutamic Acid alpha-Carbon Atom. ChemPlusChem, 78(9), 970-978. https://doi.org/10.1002/cplu.201300057 [details]
    • Osburn, S., Burgie, T., Berden, G., Oomens, J., O'Hair, R. A. J., & Ryzhov, V. (2013). Structure and Reactivity of Homocysteine Radical Cation in the Gas Phase Studied by Ion-Molecule Reactions and Infrared Multiple Photon Dissociation. The Journal of Physical Chemistry. A, 117(6), 1144-1150. https://doi.org/10.1021/jp304769y [details]
    • Piatkivskyi, A., Osburn, S., Jaderberg, K., Grzetic, J., Steill, J. D., Oomens, J., ... Ryzhov, V. (2013). Structure and Reactivity of the Distonic and Aromatic Radical Cations of Tryptophan. Journal of the American Society for Mass Spectrometry, 24(4), 513-523. https://doi.org/10.1007/s13361-013-0594-0 [details]
    • Ung, H. U., Moehlig, A. R., Khodagholian, S., Berden, G., Oomens, J., & Morton, T. H. (2013). Proton-Bridge Motions in Amine Conjugate Acid Ions Having Intramolecular Hydrogen Bonds to Hydroxyl and Amine Groups. The Journal of Physical Chemistry. A, 117(6), 1360-1369. https://doi.org/10.1021/jp311506y [details]
    • Ung, H. U., Moehlig, A. R., Kudla, R. A., Mueller, L. J., Oomens, J., Berden, G., & Morton, T. H. (2013). Proton-bound dimers of 1-methylcytosine and its derivatives: vibrational and NMR spectroscopy. Physical Chemistry Chemical Physics, 15(43), 19001-19012. https://doi.org/10.1039/c3cp52260a [details]
    • Yang, B., Wu, R. R., Polfer, N. C., Berden, G., Oomens, J., & Rodgers, M. T. (2013). IRMPD Action Spectroscopy of Alkali Metal Cation-Cytosine Complexes: Effects of Alkali Metal Cation Size on Gas Phase Conformation. Journal of the American Society for Mass Spectrometry, 24(10), 1523-1533. https://doi.org/10.1007/s13361-013-0689-7 [details]

    2012

    • Almasian, M., Grzetic, J., Berden, G., Bakker, B., Buma, W. J., & Oomens, J. (2012). Gas-phase infrared spectrum of the anionic GFP-chromophore. International Journal of Mass Spectrometry, 330-332, 118-123. https://doi.org/10.1016/j.ijms.2012.08.017 [details]
    • Almasian, M., Grzetic, J., van Maurik, J., Steill, J. D., Berden, G., Ingemann, S., ... Oomens, J. (2012). Non-equilibrium isomer distribution of the gas-phase photoactive yellow protein chromophore. The Journal of Physical Chemistry Letters, 3(16), 2259-2263. https://doi.org/10.1021/jz300780t [details]
    • Brueckmann, L., Tyrra, W., Mathur, S., Berden, G., Oomens, J., Meijer, A. J. H. M., & Schaefer, M. (2012). Examination of the coordination sphere of AlIII in trifluoromethyl-heteroarylalkenolato complex ions by gas-phase IRMPD spectroscopy and computational modelling. ChemPhysChem, 13(8), 2037-2045. https://doi.org/10.1002/cphc.201200132 [details]
    • Citir, M., Hinton, C. S., Oomens, J., Steill, J. D., & Armentrout, P. B. (2012). Infrared multiple photon dissociation spectroscopy of cationized histidine: effects of metal cation size on gas-phase conformation. The Journal of Physical Chemistry. A, 116(6), 1532-1541. https://doi.org/10.1021/jp209636a [details]
    • Contreras, C. S., Polfer, N. C., Oomens, J., Steill, J. D., Bendiak, B., & Eyler, J. R. (2012). On the path to glycan conformer identification: Gas-phase study of the anomers of methyl glycosides of N-acetyl-D-glucosamine and N-acetyl-D-galactosamine. International Journal of Mass Spectrometry, 330-332, 285-294. https://doi.org/10.1016/j.ijms.2012.09.010 [details]
    • Crampton, K. T., Rathur, A. I., Nei, Y., Berden, G., Oomens, J., & Rodgers, M. T. (2012). Protonation preferentially stabilizes minor tautomers of the halouracils: IRMPD action spectroscopy and theoretical studies. Journal of the American Society for Mass Spectrometry, 23(9), 1469-1478. https://doi.org/10.1007/s13361-012-0434-7 [details]
    • Dunbar, R. C., Polfer, N. C., Berden, G., & Oomens, J. (2012). Metal ion binding to peptides: oxygen or nitrogen sites? International Journal of Mass Spectrometry, 330-332, 71-77. https://doi.org/10.1016/j.ijms.2012.10.006 [details]
    • Dunbar, R. C., Steill, J. D., Polfer, N. C., Berden, G., & Oomens, J. (2012). Peptide bond tautomerization induced by divalent metal ions: characterization of the iminol configuration. Angewandte Chemie, International Edition, 51(19), 4591-4593. https://doi.org/10.1002/anie.201200437, https://doi.org/10.1002/ange.201200437
    • Dunbar, R. C., Steill, J. D., Polfer, N. C., Berden, G., & Oomens, J. (2012). Peptide bond tautomerization induced by divalent metal ions: characterization of the iminol configuration. Angewandte Chemie, 124, 4669-4671. https://doi.org/10.1002/ange.201200437, https://doi.org/10.1002/ange.201200437
    • Galué, H. A., & Oomens, J. (2012). On the electronic structure of isolated mono-dehydrogenated polyaromatic hydrocarbon ions and their astrophysical relevance. Astrophysical Journal, 746(1), [83]. https://doi.org/10.1088/0004-637X/746/1/83 [details]
    • Grzetic, J., & Oomens, J. (2012). Spectroscopic evidence for an oxazolone structure in anionic b-type peptide fragments. Journal of the American Society for Mass Spectrometry, 23(2), 290-300. https://doi.org/10.1007/s13361-011-0297-3 [details]
    • Grzetic, J., & Oomens, J. (2012). Structure of anionic c-type peptide fragments elucidated by IRMPD spectroscopy. International Journal of Mass Spectrometry, 316, 216-226. https://doi.org/10.1016/j.ijms.2012.02.012 [details]
    • Gámez, F., Hurtado, P., Hamad, S., Martínez-Haya, B., Berden, G., & Oomens, J. (2012). Tweezer-like complexes of crown ethers with divalent metals: probing cation-size-dependent conformations by vibrational spectroscopy in the gas phase. ChemPlusChem, 77(2), 118-123. https://doi.org/10.1002/cplu.201100044 [details]
    • Hurtado, P., Gámez, F., Hamad, S., Martínez-Haya, B., Steill, J. D., & Oomens, J. (2012). Multipodal coordination of a tetracarboxylic crown ether with NH4+: a vibrational spectroscopy and computational study. Journal of Chemical Physics, 136(11), 114301. https://doi.org/10.1063/1.3693518 [details]
    • Kullman, M. J., Molesworth, S., Berden, G., Oomens, J., & van Stipdonk, M. (2012). IRMPD spectroscopy b(2) ions from protonated tripeptides with 4-aminomethyl benzoic acid residues. International Journal of Mass Spectrometry, 316-318, 174-181. https://doi.org/10.1016/j.ijms.2012.01.008 [details]
    • Osburn, S., Berden, G., Oomens, J., O'Hair, R. A. J., & Ryzhov, V. (2012). S-to-alpha C radical migration in the radical cations of Gly-Cys and Cys-Gly. Journal of the American Society for Mass Spectrometry, 23(6), 1019-1023. https://doi.org/10.1007/s13361-012-0356-4 [details]
    • Pirali, O., Boudon, V., Oomens, J., & Vervloet, M. (2012). Rotationally resolved infrared spectroscopy of adamantane. Journal of Chemical Physics, 136(2), [024310]. https://doi.org/10.1063/1.3666853 [details]
    • Shek, P. Y. I., Lau, JK-C., Zhao, J., Grzetic, J., Verkerk, U. H., Oomens, J., ... Siu, K. W. M. (2012). Fragmentations of protonated cyclic-glycylglycine and cyclic-alanylalanine. International Journal of Mass Spectrometry, 316-318, 199-205. https://doi.org/10.1016/j.ijms.2012.02.011 [details]
    • Thevis, M., Beuck, S., Hoeppner, S., Thomas, A., Held, J., Schaefer, M., ... Schaenzer, W. (2012). Structure elucidation of the diagnostic product ion at m/z 97 derived from androst-4-en-3-one-based steroids by ESI-CID and IRMPD spectroscopy. Journal of the American Society for Mass Spectrometry, 23(3), 537-546. https://doi.org/10.1007/s13361-011-0308-4 [details]
    • Tirado, M., Rutters, J., Chen, X., Yeung, A., van Maarseveen, J., Eyler, J. R., ... Polfer, N. C. (2012). Disfavoring macrocycle b fragments by constraining torsional freedom: the "twisted" case of QWFGLM b(6). Journal of the American Society for Mass Spectrometry, 23(3), 475-482. https://doi.org/10.1007/s13361-011-0315-5 [details]
    • Tonner, R., Schwerdtfeger, P., May, A. L., Steill, J. D., Berden, G., Oomens, J., ... Compton, R. N. (2012). Stability of gas-phase tartaric acid anions investigated by quantum chemistry, mass spectrometry, and infrared spectroscopy. The Journal of Physical Chemistry. A, 116(19), 4789-4800. https://doi.org/10.1021/jp3007156 [details]
    • Van Stipdonk, M., Kullman, M., Berden, G., & Oomens, J. (2012). IRMPD and DFT study of the loss of water from protonated 2-hydroxynicotinic acid. International Journal of Mass Spectrometry, 330-332, 134-143. https://doi.org/10.1016/j.ijms.2012.06.026 [details]
    • Verkerk, U. H., Zhao, J., Lau, JK-C., Lam, T-W., Hao, Q., Steill, J. D., ... Siu, K. W. M. (2012). Structures of the a2 ions of Ala-Ala-Ala and Phe-Phe-Phe. International Journal of Mass Spectrometry, 330-332, 254-261. https://doi.org/10.1016/j.ijms.2012.08.034 [details]
    • Verkerk, U. H., Zhao, J., Saminathan, I. S., Lau, JK-C., Oomens, J., Hopkinson, A. C., & Siu, K. W. M. (2012). Infrared multiple-photon dissociation spectroscopy of tripositive ions: lanthanum-tryptophan complexes. Inorganic Chemistry, 51(8), 4707-4710. https://doi.org/10.1021/ic2026973 [details]
    • Zou, S., Oomens, J., & Polfer, N. C. (2012). Competition between diketopiperazine and oxazolone formation in water loss products from protonated ArgGly and GlyArg. International Journal of Mass Spectrometry, 316-318, 12-17. https://doi.org/10.1016/j.ijms.2011.12.020 [details]

    2011

    • Alvaro Galué, H., & Oomens, J. (2011). Spectroscopic evidence for a triplet ground state in the naphthyl cation. Angewandte Chemie, International Edition, 50(31), 7004-7007. https://doi.org/10.1002/anie.201102333, https://doi.org/10.1002/ange.201102333
    • Alvaro Galué, H., Rice, C. A., Steill, J. D., & Oomens, J. (2011). Infrared spectroscopy of ionized corannulene in the gas phase. Journal of Chemical Physics, 134(5), 054310. https://doi.org/10.1063/1.3540661 [details]
    • Bakker, J. M., Redlich, B., Meer, A. F. G., & Oomens, J. (2011). Infrared spectroscopy of gas-phase polycyclic aromatic hydrocarbon cations in the 10-50 m spectral range. Astrophysical Journal, 741(74), 1-9. https://doi.org/10.1088/0004-637X/741/2/74 [details]
    • Beran, G. J. O., Chronister, E. L., Daemen, L. L., Moehlig, A. R., Mueller, L. J., Oomens, J., ... Morton, T. H. (2011). Vibrations of a chelated proton in a protonated tertiary diamine. Physical Chemistry Chemical Physics, 13(45), 20380-20392. https://doi.org/10.1039/c1cp22065a [details]
    • Brown, D. J., Stefan, S. E., Berden, G., Steill, J. D., Oomens, J., Eyler, J. R., & Bendiak, B. (2011). Direct evidence for the ring opening of monosaccharide anions in the gas phase: photodissociation of aldohexoses and aldohexoses derived from disaccharides using variable-wavelength infrared irradiation in the carbonyl stretch region. Carbohydrate Research, 346(15), 2469-2481. https://doi.org/10.1016/j.carres.2011.06.018 [details]
    • Chen, X., Tirado, M., Steill, J. D., Oomens, J., & Polfer, N. C. (2011). Cyclic peptide as reference system for b ion structural analysis in the gas phase. Journal of Mass Spectrometry, 46(10), 1011-1015. https://doi.org/10.1002/jms.1982 [details]
    • Cooper, T. E., Carl, D. R., Oomens, J., Steill, J. D., & Armentrout, P. B. (2011). Infrared spectroscopy of divalent zinc and cadmium crown ether systems. The Journal of Physical Chemistry. A, 115(21), 5408-5422. https://doi.org/10.1021/jp202646y [details]
    • Dain, R. P., Gresham, G., Groenewold, G. S., Steill, J. D., Oomens, J., & van Stipdonk, M. J. (2011). Infrared multiple-photon dissociation spectroscopy of group II metal complexes with salicylate. Rapid Communications in Mass Spectrometry, 25(13), 1837-1846. https://doi.org/10.1002/rcm.5053 [details]
    • Dunbar, R. C., Steill, J. D., & Oomens, J. (2011). Chirality-induced conformational preferences in peptide-metal ion binding revealed by IR spectroscopy. Journal of the American Chemical Society, 133(5), 1212-1215. https://doi.org/10.1021/ja109045j [details]
    • Dunbar, R. C., Steill, J. D., & Oomens, J. (2011). Encapsulation of metal cations by the PhePhe ligand: a cation-pi ion cage. Journal of the American Chemical Society, 133(24), 9376-9386. https://doi.org/10.1021/ja200219q [details]
    • Fales, B. S., Fujamade, N. O., Nei, Y. W., Oomens, J., & Rodgers, M. T. (2011). Infrared multiple photon dissociation action spectroscopy and theoretical studies of diethyl phosphate complexes: effects of protonation and sodium cationization on structure. Journal of the American Society for Mass Spectrometry, 22(1), 81-92. https://doi.org/10.1007/s13361-010-0007-6 [details]
    • Fales, B. S., Fujamade, N. O., Oomens, J., & Rodgers, M. T. (2011). Infrared multiple photon dissociation action spectroscopy and theoretical studies of triethyl phosphate complexes: effects of protonation and sodium cationization on structure. Journal of the American Society for Mass Spectrometry, 22(10), 1862-1871. https://doi.org/10.1007/s13361-011-0208-7 [details]
    • Giorgi, G., Ceraulo, L., Berden, G., Oomens, J., & Turco Liveri, V. (2011). Gas phase infrared multiple photon dissociation spectra of positively charged sodium bis(2-ethylhexyl)sulfosuccinate reverse micelle-like aggregates. The journal of Physical Chemistry. B, 115(10), 2282-2286. https://doi.org/10.1021/jp110941p [details]
    • Groenewold, G. S., van Stipdonk, M. J., Oomens, J., de Jong, W. A., & McIlwain, M. E. (2011). The gas-phase bis-uranyl nitrate complex [(UO2)2(NO3)5]-: Infrared spectrum and structure. International Journal of Mass Spectrometry, 308(2-3), 175-180. https://doi.org/10.1016/j.ijms.2011.06.002 [details]
    • Gámez, F., Hurtado, P., Martínez-Haya, B., Berden, G., & Oomens, J. (2011). Vibrational study of isolated 18-crown-6 ether complexes with alkaline-earth metal cations. International Journal of Mass Spectrometry, 308, 217-224. https://doi.org/10.1016/j.ijms.2011.06.015 [details]
    • Hofstetter, T. E., Howder, C., Berden, G., Oomens, J., & Armentrout, P. B. (2011). Structural elucidation of biological and toxicological complexes: investigation of monomeric and dimeric complexes of histidine with multiply charged transition metal (Zn and Cd) cations using IR action spectroscopy. The journal of Physical Chemistry. B, 115(43), 12648-12661. https://doi.org/10.1021/jp207294b [details]
    • Hurtado, P., Gámez, F., Hamad, S., Martínez-Haya, B., Steill, J. D., & Oomens, J. (2011). Crown ether complexes with H(3)O(+) and NH(4)(+): proton localization and proton bridge formation. The Journal of Physical Chemistry. A, 115(25), 7275-7282. https://doi.org/10.1021/jp200481w [details]
    • Lagutschenkov, A., Langer, J., Berden, G., Oomens, J., & Dopfer, O. (2011). Infrared spectra of protonated neurotransmitters: dopamine. Physical Chemistry Chemical Physics, 13(7), 2815-2823. https://doi.org/10.1039/c0cp02133d [details]
    • Lagutschenkov, A., Langer, J., Berden, G., Oomens, J., & Dopfer, O. (2011). Infrared spectra of the protonated neurotransmitter histamine: competition between imidazolium and ammonium isomers in the gas phase. Physical Chemistry Chemical Physics, 13(34), 15644-15656. https://doi.org/10.1039/c1cp21681c [details]
    • Massah, A. R., Dreiocker, F., Jackson, R. F. W., Pickup, B. T., Oomens, J., Meijer, A. J. H. M., & Schaefer, M. (2011). Gas-phase study of new organozinc reagents by IRMPD-spectroscopy, computational modelling and tandem-MS. Physical Chemistry Chemical Physics, 13(29), 13255-13267. https://doi.org/10.1039/c1cp20747d [details]
    • Nei, Y. W., Akinyemi, T. E., Kaczan, C. M., Steill, J. D., Berden, G., Oomens, J., & Rodgers, M. T. (2011). Infrared multiple photon dissociation action spectroscopy of sodiated uracil and thiouracils: effects of thioketo-substitution on gas-phase conformation. International Journal of Mass Spectrometry, 308(2-3), 191-202. https://doi.org/10.1016/j.ijms.2011.06.019 [details]
    • Oomens, J., & Morton, T. H. (2011). Aldehyde and ketone adducts of the gaseous trifluoromethyl cation. Organic Letters, 13(9), 2176-2179. https://doi.org/10.1021/ol200369m [details]
    • Oomens, J., & Morton, T. H. (2011). Fluoronium metathesis and rearrangements of fluorine stabilized carbocations. International Journal of Mass Spectrometry, 308(2-3), 232-238. https://doi.org/10.1016/j.ijms.2011.07.024 [details]
    • Osburn, S., Berden, G., Oomens, J., O'Hair, R. A. J., & Ryzhov, V. (2011). Structure and reactivity of the N-acetyl-cysteine radical cation and anion: does radical migration occur? Journal of the American Society for Mass Spectrometry, 22(10), 1794-1803. https://doi.org/10.1007/s13361-011-0198-5 [details]
    • Osburn, S., Steill, J. D., Oomens, J., O'Hair, R. A. J., van Stipdonk, M., & Ryzhov, V. (2011). Structure and reactivity of the cysteine methyl ester radical cation. Chemistry - A European Journal, 17(3), 873-879. https://doi.org/10.1002/chem.201002042 [details]
    • Prell, J. S., Chang, T. M., Biles, J. A., Berden, G., Oomens, J., & Williams, E. R. (2011). Isomer population analysis of gaseous ions from infrared multiple photon dissociation kinetics. The Journal of Physical Chemistry. A, 115(13), 2745-2751. https://doi.org/10.1021/jp2004166 [details]
    • Ross, A. J., Dreiocker, F., Schäfer, M., Oomens, J., Meijer, A. J. H. M., Pickup, B. T., & Jackson, R. F. W. (2011). Evidence for the role of tetramethylethylenediamine in aqueous Negishi cross-coupling: synthesis of nonproteinogenic phenylalanine derivatives on water. Journal of Organic Chemistry, 76(6), 1727-1734. https://doi.org/10.1021/jo102334c [details]
    • Rummel, J. L., Steill, J. D., Oomens, J., Contreras, C. S., Pearson, W. L., Szczepanski, J., ... Eyler, J. R. (2011). Structural elucidation of direct analysis in real time ionized nerve agent simulants with infrared multiple photon dissociation spectroscopy. Analytical Chemistry, 83(11), 4045-4052. https://doi.org/10.1021/ac102973a [details]
    • Steill, J. D., & Oomens, J. (2011). Spectroscopically resolved competition between dissociation and detachment from nitrobenzene radical anion. International Journal of Mass Spectrometry, 308(2-3), 239-252. https://doi.org/10.1016/j.ijms.2011.08.001 [details]
    • Steill, J. D., Szczepanski, J., Oomens, J., Eyler, J. R., & Brajter-Toth, A. (2011). Structural characterization by infrared multiple photon dissociation spectroscopy of protonated gas-phase ions obtained by electrospray ionization of cysteine and dopamine. Analytical and Bioanalytical Chemistry, 399(7), 2463-2473. https://doi.org/10.1007/s00216-010-4582-y [details]
    • Szczepanski, J., Oomens, J., Steill, J. D., & Vala, M. T. (2011). H2 ejection from polycyclic aromatic hydrocarbons: infrared multiphoton dissociation study of protonated acenaphthene and 9,10-dihydrophenanthrene. Astrophysical Journal, 727(1), 12. https://doi.org/10.1088/0004-637X/727/1/12 [details]
    • Vala, M., Szczepanski, J., & Oomens, J. (2011). Formation of molecular hydrogen from protonated 9,10-dihydroanthracene: is the ejected H2 rotationally and vibrationally excited? International Journal of Mass Spectrometry, 308, 181-190. https://doi.org/10.1016/j.ijms.2011.06.008 [details]
    • Verkerk, U. H., Zhao, J., van Stipdonk, M. J., Bythell, B. J., Oomens, J., Hopkinson, A. C., & Siu, K. W. M. (2011). Structure of the [M + H - H2O]+ ion from tetraglycine: a revisit by means of density functional theory and isotope labeling. The Journal of Physical Chemistry. A, 115(24), 6683-6687. https://doi.org/10.1021/jp202820h [details]
    • Yao, H., Steill, J. D., Oomens, J., & Jockusch, R. A. (2011). Infrared multiple photon dissociation action spectroscopy and computational studies of mass-selected gas-phase fluorescein and 2 ',7 '-dichlorofluorescein ions. The Journal of Physical Chemistry. A, 115(34), 9739-9747. https://doi.org/10.1021/jp201946a [details]
    • van Zundert, G. C. P., Jaeqx, S., Berden, G., Bakker, J. M., Kleinermanns, K., Oomens, J., & Rijs, A. M. (2011). IR spectroscopy of isolated neutral and protonated adenine and 9-methyladenine. ChemPhysChem, 12(10), 1921-1927. https://doi.org/10.1002/cphc.201100133 [details]

    2010

    • Ard, S., Mirsaleh-Kohan, N., Steill, J. D., Oomens, J., Nielsen, S. B., & Compton, R. N. (2010). Dissociation of dicarboxylate and disulfonate dianions. Journal of Chemical Physics, 132(9), 094301. https://doi.org/10.1063/1.3292577 [details]
    • Chen, X., Steill, J. D., Oomens, J., & Polfer, N. C. (2010). Oxazolone versus macrocycle structures for Leu-enkephalin b2-b4: Insights from infrared multiple-photon dissociation spectroscopy and gas-phase hydrogen/deuterium exchange. Journal of the American Society for Mass Spectrometry, 21(8), 1313-1321. https://doi.org/10.1016/j.jasms.2010.02.022 [details]
    • Citir, M., Stennett, E. M. S., Oomens, J., Steill, J. D., Rodgers, M. T., & Armentrout, P. B. (2010). Infrared multiple photon dissociation spectroscopy of cationized cysteine: Effects of metal cation size on gas-phase conformation. International Journal of Mass Spectrometry, 297(1-3), 9-17. https://doi.org/10.1016/j.ijms.2010.04.009 [details]
    • Drayß, M. K., Armentrout, P. B., Oomens, J., & Schäfer, M. (2010). IR spectroscopy of cationized aliphatic amino acids: Stability of charge-solvated structure increases with metal cation size. International Journal of Mass Spectrometry, 297(1-3), 18-27. https://doi.org/10.1016/j.ijms.2010.04.010 [details]
    • Dreiocker, F., Oomens, J., Meijer, A. J. H. M., Pickup, B. T., Jackson, R. F. W., & Schäfer, M. (2010). Structure elucidation of dimethylformamide-solvated alkylzinc cations in the gas phase. Journal of Organic Chemistry, 75(4), 1203-1213. https://doi.org/10.1021/jo902492z [details]
    • Dunbar, R. C., Steill, J. D., & Oomens, J. (2010). Cationized phenylalanine conformations characterized by IRMPD and computation for singly and doubly charged ions. Physical Chemistry Chemical Physics, 12(41), 13383-13393. https://doi.org/10.1039/c0cp00784f [details]
    • Dunbar, R. C., Steill, J. D., & Oomens, J. (2010). Conformations and vibrational spectroscopy of metal-ion/polylalanine complexes. International Journal of Mass Spectrometry, 297(1-3), 107-115. https://doi.org/10.1016/j.ijms.2010.07.001 [details]
    • Galué, H. A., Pirali, O., & Oomens, J. (2010). Gas-phase infrared spectra of cationized nitrogen-substituted polycyclic aromatic hydrocarbons. Astronomy & Astrophysics, 517, A15. https://doi.org/10.1051/0004-6361/201014050 [details]
    • Groenewold, G. S., de Jong, W. A., Oomens, J., & van Stipdonk, M. J. (2010). Variable denticity in carboxylate binding to the uranyl coordination complexes. Journal of the American Society for Mass Spectrometry, 21(5), 719-727. https://doi.org/10.1016/j.jasms.2010.01.021 [details]
    • Lagutschenkov, A., Langer, J., Berden, G., Oomens, J., & Dopfer, O. (2010). Infrared spectra of protonated neurotransmitters: serotonin. The Journal of Physical Chemistry. A, 114(50), 13268-13276. https://doi.org/10.1021/jp109337a [details]
    • Martínez-Haya, B., Hurtado, P., Hortal, A. R., Hamad, S., Steill, J. D., & Oomens, J. (2010). Emergence of symmetry and chirality in crown ether complexes with alkali metal cations. The Journal of Physical Chemistry. A, 114(26), 7048-7054. https://doi.org/10.1021/jp103389g [details]
    • Nei, Y. W., Akinyemi, T. E., Steill, J. D., Oomens, J., & Rodgers, M. T. (2010). Infrared multiple photon dissociation action spectroscopy of protonated uracil and thiouracils: Effects of thioketo-substitution on gas-phase conformation. International Journal of Mass Spectrometry, 297(1-3), 139-151. https://doi.org/10.1016/j.ijms.2010.08.005 [details]
    • O'Brien, J. T., Prell, J. S., Berden, G., Oomens, J., & Williams, E. R. (2010). Effects of anions on the zwitterion stability of Glu, His and Arg investigated by IRMPD spectroscopy and theory. International Journal of Mass Spectrometry, 297(1-3), 116-123. https://doi.org/10.1016/j.ijms.2010.07.003 [details]
    • Oomens, J., & Morton, T. H. (2010). Structures of products from positive ion-molecule reactions by means of vibrational spectroscopy. European Journal of Mass Spectrometry, 16(3), 313-319. https://doi.org/10.1255/ejms.1060 [details]
    • Oomens, J., & Steill, J. D. (2010). The structure of deprotonated tri-alanine and its a(3)(-) fragment anion by IR spectroscopy. Journal of the American Society for Mass Spectrometry, 21(5), 698-706. https://doi.org/10.1016/j.jasms.2010.01.004 [details]
    • Oomens, J., Moehlig, A. R., & Morton, T. H. (2010). Infrared multiple photon dissociation (IRMPD) spectroscopy of the proton-bound dimer of 1-methylcytosine in the gas phase. The Journal of Physical Chemistry Letters, 1(19), 2891-2897. https://doi.org/10.1021/jz101080x [details]
    • Oomens, J., Steill, J. D., & Morton, T. H. (2010). IR spectra of boron-stabilized anions in the gas phase. Inorganic Chemistry, 49(15), 6781-6783. https://doi.org/10.1021/ic1005874 [details]
    • Palii, S. P., Contreras, C. S., Steill, J. D., Palii, S. S., Oomens, J., & Eyler, J. R. (2010). Triuret as a potential hypokalemic agent: Structure characterization of triuret and triuret-alkali metal adducts by mass spectrometric techniques. Archives of biochemistry and biophysics, 498(1), 23-34. https://doi.org/10.1016/j.abb.2010.03.023 [details]
    • Pirali, O., Galué, H. A., Dahl, J. E., Carlson, R. M. K., & Oomens, J. (2010). Infrared spectra and structures of diamantyl and triamantyl carbocations. International Journal of Mass Spectrometry, 297(1-3), 55-62. https://doi.org/10.1016/j.ijms.2010.05.018 [details]
    • Rijs, A. M., Sändig, N., Blom, M. N., Oomens, J., Hannam, J. S., Leigh, D. A., ... Buma, W. J. (2010). Controlled hydrogen-bond breaking in a rotaxane by discrete solvation. Angewandte Chemie, International Edition, 49(23), 3896-3900. https://doi.org/10.1002/anie.201001231, https://doi.org/10.1002/ange.201001231
    • Rijs, A. M., Sändig, N., Blom, M. N., Oomens, J., Hannam, J. S., Leigh, D. A., ... Buma, W. J. (2010). Controlled hydrogen-bond breaking in a rotaxane by discrete solvation. Angewandte Chemie, 122, 3988-3992. https://doi.org/10.1002/ange.201001231, https://doi.org/10.1002/anie.201001231
    • Verkerk, U. H., Siu, C. K., Steill, J. D., El Aribi, H., Zhao, J., Rodriquez, C. F., ... Siu, K. W. M. (2010). a2 ion derived from triglycine: an N1-protonated 4-imidazolidinone. The Journal of Physical Chemistry Letters, 1(5), 868-872. https://doi.org/10.1021/jz900464a [details]

    2009

    • Chen, X., Yu, L., Steill, J. D., Oomens, J., & Polfer, N. C. (2009). Effect of peptide fragment size on the propensity of cyclization in collision-induced dissociation: Oligoglycine b2-b8. Journal of the American Chemical Society, 131(51), 18272-18282. https://doi.org/10.1021/ja9030837 [details]
    • Drayß, M. K., Blunk, D., Oomens, J., Gao, B., Wyttenbach, T., Bowers, M. T., & Schäfer, M. (2009). Systematic study of the structures of potassiated tertiary amino acids: salt bridge structures dominate. The Journal of Physical Chemistry. A, 113(34), 9543-9550. https://doi.org/10.1021/jp903036t [details]
    • Dunbar, R. C., Steill, J. D., Polfer, N. C., & Oomens, J. (2009). Peptide length, steric effects, and ion solvation govern zwitterion stabilization in barium-chelated di- and tripeptides. The journal of Physical Chemistry. B, 113(31), 10552-10554. https://doi.org/10.1021/jp905060n [details]
    • Knorke, H., Langer, J., Oomens, J., & Dopfer, O. (2009). Infrared spectra of isolated protonated polycyclic aromatic hydrocarbon molecules. Astrophysical Journal Letters, 706(1), L66-L70. https://doi.org/10.1088/0004-637X/706/1/L66 [details]
    • Rijs, A. M., Compagnon, I., Oomens, J., Hannam, J. S., Leigh, D. A., & Buma, W. J. (2009). Stiff, and sticky in the right places: Binding interactions in isolated mechanically interlocked molecules probed by mid-infrared spectroscopy. Journal of the American Chemical Society, 131(7), 2428-2429. https://doi.org/10.1021/ja808788c [details]
    • Steill, J. D., & Oomens, J. (2009). Gas-phase deprotonation of p-hydroxybenzoic acid investigated by IR spectroscopy: Solution-phase structure is retained upon ESI. Journal of the American Chemical Society, 131(38), 13570-13571. https://doi.org/10.1021/ja903877v [details]
    • Zhao, D., Langer, J., Oomens, J., & Dopfer, O. (2009). Infrared spectra of protonated polycyclic aromatic hydrocarbon molecules: Azulene. Journal of Chemical Physics, 131(18), 184307. https://doi.org/10.1063/1.3262720 [details]

    2017

    • Boles, G. C., Owen, C. J., Berden, G., Oomens, J., & Armentrout, P. B. (2017). Correction: Experimental and theoretical investigations of infrared multiple photon dissociation spectra of glutamic acid complexes with Zn2+ and Cd2+. Physical Chemistry Chemical Physics, 19(28), 18774-18776. https://doi.org/10.1039/c7cp90145c
    • Coates, R. A., Boles, G. C., McNary, C. P., Berden, G., Oomens, J., & Armentrout, P. B. (2017). Correction: Zn2+ and Cd2+ cationized serine complexes: infrared multiple photon dissociation spectroscopy and density functional theory investigations. Physical Chemistry Chemical Physics, 19(27), 18100-18101. https://doi.org/10.1039/c7cp90143g
    • Coates, R. A., McNary, C. P., Boles, G. C., Berden, G., Oomens, J., & Armentrout, P. B. (2017). Correction: Structural characterization of gas-phase cysteine and cysteine methyl ester complexes with zinc and cadmium dications by infrared multiple photon dissociation spectroscopy. Physical Chemistry Chemical Physics, 19(28), 18777-18778. https://doi.org/10.1039/c7cp90144e

    2011

    • Oomens, J. (2011). Laboratory infrared spectroscopy of PAHs. In C. Joblin, & A. G. G. M. Tielens (Eds.), PAHs and the Universe (pp. 61-73). (EAS Publication Series; No. Vol. 46.). Les Ulis: EDP Sciences. https://doi.org/10.1051/eas/1146007 [details]

    2013

    • Piatkivskyi, A., Osburn, S., Jaderberg, K., Grzetic, J., Steill, J. D., Oomens, J., ... Ryzhov, V. (2013). Erratum to: Structure and reactivity of the distonic and aromatic radical cations of tryptophan. Journal of the American Society for Mass Spectrometry, 24(10), 1620. https://doi.org/10.1007/s13361-013-0708-8

    Award

    • Oomens, J. (2016). MSCA-ITN-ETN network “EUROPAH”.
    This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications. Log in to Personal Page Publication Selection tool to manage the visibility of your publications on this list.
  • Ancillary activities
    • Fontline
      Vertaler