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Van 't Hoff Institute for Molecular Sciences null

Dr I.M. (Ioana) Ilie

Faculty of Science
Van 't Hoff Institute for Molecular Sciences
Photographer: Steven Kohl
Visiting address
  • Science Park 904
Postal address
  • Postbus 94157
    1090 GD Amsterdam
Contact details
  • Publications

    2022

    • Ilie, I. M. (2022). Antibody binding increases the flexibility of the prion protein. Biochimica et Biophysica Acta. Proteins and Proteomics, 1870, 140827.
    • Ilie, I. M. (2022). Antibody binding modulates the dynamics of the membrane-bound prion protein. Biophysical Journal, 121, 1.
    • Ilie, I. M. (2022). Interactions of Curcumin’s Degradation Products with the Aβ42 Dimer: A Computational Study. Journal of Physical Chemistry B, 126, 76267.
    • Ilie, I. M. (2022). Silybins inhibit human IAPP amyloid growth and toxicity through stereospecific interactions. Biochimica et Biophysica Acta. Proteins and Proteomics, 1870.
    • Ilie, I. M. (2022). The role of the first transmembrane helix in bacterial YidC: Insights from the crystal structure and molecular dynamics simulations, Biochimica et Biophysica Acta Biomembranes, 1864, 183825.
    • Ilie, I. M. (2022). Thermostable designed ankyrin repeat proteins (DARPins) as building blocks for innovative drugs. The Journal of Biological Chemistry, 1, 101403.

    2021

    • Ilie, I. M. (2021). Flanking sequence preference modulated de novo DNA methylation in the mouse genome. Nucleic Acids Research, 49, 145-157.

    2019

    • Ilie, I. M. (2019). Simulation Studies of Amyloidogenic Peptides and their Aggregates. Chemical Reviews, 119, 6956-6993.

    2018

    • Ilie, I. M. (2018). Disorder at the tips of a disease-relevant Aβ amyloid fibril. A Molecular Dynamics study. The journal of Physical Chemistry. B, 122, 11072-11083.
    • Ilie, I. M. (2018). Intrinsic conformational preferences in α-synuclein fibrils: Insights from Molecular Dynamics Simulations. Journal of Chemical Theory and Computation, 14, 3298-3310.

    2017

    • Ilie, I. M. (2017). The attachment of α-synuclein to a fiber: a coarse-grain approach. Journal of Chemical Physics, 146, 115102.

    2016

    • Ilie, I. M. (2016). A coarse grained protein model with internal degrees of freedom. Application to α-synuclein aggregation. Journal of Chemical Physics, 144, 085103.

    2015

    • Ilie, I. M. (2015). An elementary singularity-free Rotational Brownian Dynamics algorithm for anisotropic particles. Journal of Chemical Physics, 142, 114103.

    2014

    • Ilie, I. M. (2014). Rotational Brownian Dynamics of Clathrin Cage Formation. Journal of Chemical Physics, 141, 065101.

    Prize / grant

    • Ilie, I. (2022). Career Development Award.

    Membership / relevant position

    • Ilie, I. (2022-). Assistant Professor Network.

    Journal editor

    • Ilie, I. (editor) (2022). eLife (Journal).
    • Ilie, I. (editor) (2022). Frontiers: New approaches to Biophysical Investigation of Protein Disorder and Folding (Journal).

    Talk / presentation

    • Ilie, I. (speaker) (22-11-2022). Rationally designed peptides to inhibit prion toxicity, Synapsis Forum, Gerzensee.
    • Ilie, I. (speaker) (14-11-2022). Antibody binding modulates the dynamics of the cellular prion protein, Lennard Jones Seminars.
    • Ilie, I. (speaker) (14-11-2022). Multiscale simulations of biomolecular systems, Dutch Soft Matter Meeting, Wageningen.
    • Ilie, I. (speaker) (1-10-2022). Antibody binding modulates the dynamics of the membrane-bound prion protein, Dutch Biophysics.
    • Ilie, I. (speaker) (1-9-2022). Antibody binding modulates the dynamics of the cellular prion protein, IDP Seminars.
    • Ilie, I. (speaker) (12-5-2022). Multiscale simulations of protein folding, aggregation and disease inhibition, Molecular Bases of Proteinopathies Symposium.
    • Ilie, I. (speaker) (31-1-2022). Antibody binding modulates the dynamics of the cellular prion protein, II Physics Postgraduate Weel, Lavras.

    Others

    • Ilie, I. (organiser) (29-6-2023 - 30-6-2023). NextGenChem@NL (organising a conference, workshop, ...).
    • Ilie, I. (other) (1-1-2023). Outreach: Jury member Akademikus/AkademiX (other).
    • Ilie, I. (participant) (21-9-2022). CHAINS, Veldhoven (participating in a conference, workshop, ...).
    • Ilie, I. (participant) (1-9-2022). StatMech Erice (IT) (participating in a conference, workshop, ...).
    • Ilie, I. (participant) (1-5-2022). NWO Life (participating in a conference, workshop, ...).
    • Ilie, I. (participant) (1-4-2022). KNCV-CTC-PhD+ Seminars. KNCV-CTC-PhD+ Seminars supported by the Computational and Theoretical Chemistry (CTC) division of the Royal Netherlands Chemical Society (KNCV) (organising a conference, workshop, ...).
    • Ilie, I. (organiser) (2022). KNCV-CTC-PhD+ Seminar series (organising a conference, workshop, ...).
    This list of publications is extracted from the UvA-Current Research Information System. Questions? Ask the library or the Pure staff of your faculty / institute. Log in to Pure to edit your publications. Log in to Personal Page Publication Selection tool to manage the visibility of your publications on this list.
  • Ancillary activities
    No ancillary activities
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